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Journal of Biological Rhythms, Vol. 12, No. 3, 204-217 (1997)
DOI: 10.1177/074873049701200302

Quantitative Analysis of Drosophila period Gene Transcription in Living Animals

Jeffrey D. Plautz

Department of Biology and NSF Center for Biological Timing, University of Virginia, Charlottesville, VA 22903

Martin Straume

NSF Center for Biological Timing and Department of Internal Medicine, University of Virginia Health Sciences Center, Charlottesville, VA 22908

Ralf Stanewsky

Department of Biology and NSF Center for Biological Timing, Brandeis University, Waltham, MA 02254

Creston F. Jamison

Department of Biology and NSF Center for Biological Timing, Brandeis University, Waltham, MA 02254

Christian Brandes

Department of Biology and NSF Center for Biological Timing, Brandeis University, Waltham, MA 02254

Harold B. Dowse

Department of Zoology, Murray Hall, University of Maine, Orono, ME 04469

Jeffrey C. Hall

Department of Biology and NSF Center for Biological Timing, Brandeis University, Waltham, MA 02254

Steve A. Kay

Department of Biology and NSF Center for Biological Timing, University of Virginia, Charlottesville, VA 22903

To determine the in vivo regulatory pattern of the clock gene period (per), the authors recently developed transgenic Drosophila carrying a luciferase cDNA fused to the promoter region of per. They have now carried out noninvasive, high time-resolution experiments allowing high-throughput monitoring of circadian bioluminescence rhythms in individual living adults for several days. This immediately solved several problems (resulting directly from individual asyn chrony within a population) that have accompanied previous biochemical ex periments in which groups of animals were sacrificed at each time point. Furthermore, the authors have developed numerical analysis methods for auto matically determining rhythmicity associated with bioluminescence records from single flies. This has revealed some features of per gene transcription that were previously unappreciated and provides a general strategy for the analysis of rhythmic time series in the study of molecular rhythms.

Key Words: Drosophila • period gene • circadian clock • luciferase • automated rhythm analysis


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[Abstract] [Full Text] [PDF]


Home page
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[Abstract] [Full Text] [PDF]


Home page
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Home page
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[Abstract] [Full Text] [PDF]


Home page
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Home page
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[Abstract] [Full Text] [PDF]


Home page
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Home page
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Home page
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[Abstract] [Full Text]


Home page
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Science, September 3, 1999; 285(5433): 1579 - 1582.
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Home page
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